diff --git a/README.md b/README.md
index cd4b0bf..169daf5 100644
--- a/README.md
+++ b/README.md
@@ -259,13 +259,23 @@ topdata:
         granted_on_level: -1
         on_menu: 0
   wiki:
+    source: topdata/wiki
     output_root: wiki
     pages_dir: pages
     state_file: state.json
+    page_index_file: page-index.json
     managed_namespaces: [classes, feat, itemtypes, races, skills, spells, meta]
     deploy_manifest: .wiki_deploy_manifest.json
     deploy_edit_summary: Auto-generated from native builder
+    namespaces_file: namespaces.yaml
+    data_file: data.yaml
+    page_paths_file: wiki.yaml
+    tables_file: tables.yaml
     visibility_file: visibility.yaml
+    templates_dir: templates
+    page_templates_dir: templates/pages
+    manual_sections_dir: manual-sections
+    manual_sections_file: manual-sections/default.yaml
     title_prefix_min_length: 3
     status_listing_scope: all
 
@@ -325,6 +335,15 @@ topdata:
       target_pattern: Guides/Alignment/{alignment}
 ```
 
+Generated wiki input and output paths are YAML-configurable. `source` points to
+the wiki authoring root, `data_file`, `page_paths_file`, `tables_file`,
+`visibility_file`, `page_templates_dir`, and `manual_sections_file` are resolved
+under that source root, and `page_index_file`, `pages_dir`, and `state_file` are
+resolved under the configured wiki output root. `templates_dir` and
+`manual_sections_dir` remain as compatibility defaults for deriving
+`page_templates_dir` and `manual_sections_file` when the newer explicit paths
+are omitted.
+
 `paths.source` and `paths.assets` must name real repository subtrees when they
 are configured. They may be omitted for repositories that do not own that class
 of source, but they must not resolve to the repository root (`.`). Output and
diff --git a/internal/project/effective.go b/internal/project/effective.go
index b73c7ac..139717c 100644
--- a/internal/project/effective.go
+++ b/internal/project/effective.go
@@ -41,8 +41,13 @@ const (
 	DefaultTopDataWikiNamespacesFile       = "namespaces.yaml"
 	DefaultTopDataWikiTablesFile           = "tables.yaml"
 	DefaultTopDataWikiVisibilityFile       = "visibility.yaml"
+	DefaultTopDataWikiDataFile             = "data.yaml"
+	DefaultTopDataWikiPagePathsFile        = "wiki.yaml"
 	DefaultTopDataWikiTemplatesDir         = "templates"
+	DefaultTopDataWikiPageTemplatesDir     = "templates/pages"
 	DefaultTopDataWikiManualSectionsDir    = "manual-sections"
+	DefaultTopDataWikiManualSectionsFile   = "manual-sections/default.yaml"
+	DefaultTopDataWikiPageIndexFile        = "page-index.json"
 	DefaultTopDataWikiStaleDefault         = "report"
 	DefaultTopDataWikiStaleLiveCleanup     = "archive"
 	DefaultTopDataWikiMarkerFormat         = "html_comments"
@@ -258,8 +263,13 @@ func (p *Project) EffectiveConfig() EffectiveConfig {
 			NamespacesFile:       defaultString(p.Config.TopData.Wiki.NamespacesFile, DefaultTopDataWikiNamespacesFile),
 			TablesFile:           defaultString(p.Config.TopData.Wiki.TablesFile, DefaultTopDataWikiTablesFile),
 			VisibilityFile:       defaultString(p.Config.TopData.Wiki.VisibilityFile, DefaultTopDataWikiVisibilityFile),
+			DataFile:             defaultString(p.Config.TopData.Wiki.DataFile, DefaultTopDataWikiDataFile),
+			PagePathsFile:        defaultString(p.Config.TopData.Wiki.PagePathsFile, DefaultTopDataWikiPagePathsFile),
 			TemplatesDir:         defaultString(p.Config.TopData.Wiki.TemplatesDir, DefaultTopDataWikiTemplatesDir),
+			PageTemplatesDir:     defaultWikiPageTemplatesDir(p.Config.TopData.Wiki),
 			ManualSectionsDir:    defaultString(p.Config.TopData.Wiki.ManualSectionsDir, DefaultTopDataWikiManualSectionsDir),
+			ManualSectionsFile:   defaultWikiManualSectionsFile(p.Config.TopData.Wiki),
+			PageIndexFile:        defaultString(p.Config.TopData.Wiki.PageIndexFile, DefaultTopDataWikiPageIndexFile),
 			AlignmentLinks:       p.Config.TopData.Wiki.AlignmentLinks,
 			TitlePrefixMinLength: defaultInt(p.Config.TopData.Wiki.TitlePrefixMinLength, DefaultTopDataWikiTitlePrefixMinLength),
 			StatusPages:          defaultBoolPointer(p.Config.TopData.Wiki.StatusPages, DefaultTopDataWikiStatusPages),
@@ -551,8 +561,13 @@ func markMissingDefaults(provenance ConfigProvenance) {
 		"topdata.wiki.namespaces_file":                   DefaultTopDataWikiNamespacesFile,
 		"topdata.wiki.tables_file":                       DefaultTopDataWikiTablesFile,
 		"topdata.wiki.visibility_file":                   DefaultTopDataWikiVisibilityFile,
+		"topdata.wiki.data_file":                         DefaultTopDataWikiDataFile,
+		"topdata.wiki.page_paths_file":                   DefaultTopDataWikiPagePathsFile,
 		"topdata.wiki.templates_dir":                     DefaultTopDataWikiTemplatesDir,
+		"topdata.wiki.page_templates_dir":                DefaultTopDataWikiPageTemplatesDir,
 		"topdata.wiki.manual_sections_dir":               DefaultTopDataWikiManualSectionsDir,
+		"topdata.wiki.manual_sections_file":              DefaultTopDataWikiManualSectionsFile,
+		"topdata.wiki.page_index_file":                   DefaultTopDataWikiPageIndexFile,
 		"topdata.wiki.title_prefix_min_length":           "3",
 		"topdata.wiki.status_pages":                      "true",
 		"topdata.wiki.status_listing_scope":              DefaultTopDataWikiStatusListingScope,
@@ -618,6 +633,26 @@ func defaultStringSlice(value, fallback []string) []string {
 	return slices.Clone(value)
 }
 
+func defaultWikiPageTemplatesDir(cfg TopDataWikiConfig) string {
+	if strings.TrimSpace(cfg.PageTemplatesDir) != "" {
+		return strings.TrimSpace(cfg.PageTemplatesDir)
+	}
+	if strings.TrimSpace(cfg.TemplatesDir) != "" {
+		return filepath.ToSlash(filepath.Join(filepath.FromSlash(strings.TrimSpace(cfg.TemplatesDir)), "pages"))
+	}
+	return DefaultTopDataWikiPageTemplatesDir
+}
+
+func defaultWikiManualSectionsFile(cfg TopDataWikiConfig) string {
+	if strings.TrimSpace(cfg.ManualSectionsFile) != "" {
+		return strings.TrimSpace(cfg.ManualSectionsFile)
+	}
+	if strings.TrimSpace(cfg.ManualSectionsDir) != "" {
+		return filepath.ToSlash(filepath.Join(filepath.FromSlash(strings.TrimSpace(cfg.ManualSectionsDir)), "default.yaml"))
+	}
+	return DefaultTopDataWikiManualSectionsFile
+}
+
 func defaultRequiredFields(configured map[string][]string) map[string][]string {
 	if len(configured) > 0 {
 		return cloneStringSliceMap(normalizeRequiredFields(configured))
diff --git a/internal/project/project.go b/internal/project/project.go
index d45ce6b..0227ca5 100644
--- a/internal/project/project.go
+++ b/internal/project/project.go
@@ -277,8 +277,13 @@ type TopDataWikiConfig struct {
 	NamespacesFile       string                         `json:"namespaces_file" yaml:"namespaces_file"`
 	TablesFile           string                         `json:"tables_file" yaml:"tables_file"`
 	VisibilityFile       string                         `json:"visibility_file" yaml:"visibility_file"`
+	DataFile             string                         `json:"data_file" yaml:"data_file"`
+	PagePathsFile        string                         `json:"page_paths_file" yaml:"page_paths_file"`
 	TemplatesDir         string                         `json:"templates_dir" yaml:"templates_dir"`
+	PageTemplatesDir     string                         `json:"page_templates_dir" yaml:"page_templates_dir"`
 	ManualSectionsDir    string                         `json:"manual_sections_dir" yaml:"manual_sections_dir"`
+	ManualSectionsFile   string                         `json:"manual_sections_file" yaml:"manual_sections_file"`
+	PageIndexFile        string                         `json:"page_index_file" yaml:"page_index_file"`
 	AlignmentLinks       TopDataWikiAlignmentLinks      `json:"alignment_links" yaml:"alignment_links"`
 	TitlePrefixMinLength int                            `json:"title_prefix_min_length" yaml:"title_prefix_min_length"`
 	StatusPages          *bool                          `json:"status_pages,omitempty" yaml:"status_pages,omitempty"`
@@ -587,8 +592,17 @@ func (p *Project) ValidateLayout() error {
 		"topdata.wiki.state_file":               p.Config.TopData.Wiki.StateFile,
 		"topdata.wiki.deploy_manifest":          p.Config.TopData.Wiki.DeployManifest,
 		"topdata.wiki.deploy_edit_summary":      p.Config.TopData.Wiki.DeployEditSummary,
+		"topdata.wiki.source":                   p.Config.TopData.Wiki.Source,
+		"topdata.wiki.namespaces_file":          p.Config.TopData.Wiki.NamespacesFile,
 		"topdata.wiki.tables_file":              p.Config.TopData.Wiki.TablesFile,
 		"topdata.wiki.visibility_file":          p.Config.TopData.Wiki.VisibilityFile,
+		"topdata.wiki.data_file":                p.Config.TopData.Wiki.DataFile,
+		"topdata.wiki.page_paths_file":          p.Config.TopData.Wiki.PagePathsFile,
+		"topdata.wiki.templates_dir":            p.Config.TopData.Wiki.TemplatesDir,
+		"topdata.wiki.page_templates_dir":       p.Config.TopData.Wiki.PageTemplatesDir,
+		"topdata.wiki.manual_sections_dir":      p.Config.TopData.Wiki.ManualSectionsDir,
+		"topdata.wiki.manual_sections_file":     p.Config.TopData.Wiki.ManualSectionsFile,
+		"topdata.wiki.page_index_file":          p.Config.TopData.Wiki.PageIndexFile,
 		"extract.layout":                        p.Config.Extract.Layout,
 		"extract.hak_discovery":                 p.Config.Extract.HAKDiscovery,
 		"autogen.cache.root":                    p.Config.Autogen.Cache.Root,
@@ -627,8 +641,13 @@ func (p *Project) ValidateLayout() error {
 	failures = append(failures, validateRelativePath("topdata.wiki.namespaces_file", effective.TopData.Wiki.NamespacesFile)...)
 	failures = append(failures, validateRelativePath("topdata.wiki.tables_file", effective.TopData.Wiki.TablesFile)...)
 	failures = append(failures, validateRelativePath("topdata.wiki.visibility_file", effective.TopData.Wiki.VisibilityFile)...)
+	failures = append(failures, validateRelativePath("topdata.wiki.data_file", effective.TopData.Wiki.DataFile)...)
+	failures = append(failures, validateRelativePath("topdata.wiki.page_paths_file", effective.TopData.Wiki.PagePathsFile)...)
 	failures = append(failures, validateTreeRootPath("topdata.wiki.templates_dir", effective.TopData.Wiki.TemplatesDir)...)
+	failures = append(failures, validateRelativePath("topdata.wiki.page_templates_dir", effective.TopData.Wiki.PageTemplatesDir)...)
 	failures = append(failures, validateTreeRootPath("topdata.wiki.manual_sections_dir", effective.TopData.Wiki.ManualSectionsDir)...)
+	failures = append(failures, validateRelativePath("topdata.wiki.manual_sections_file", effective.TopData.Wiki.ManualSectionsFile)...)
+	failures = append(failures, validateRelativePath("topdata.wiki.page_index_file", effective.TopData.Wiki.PageIndexFile)...)
 	failures = append(failures, validateRelativePath("autogen.cache.root", effective.Autogen.Cache.Root)...)
 	if err := validateOutputFileName("outputs.module_archive", filepath.Base(effective.Outputs.ModuleArchive), ".mod"); err != nil {
 		failures = append(failures, err)
@@ -642,6 +661,9 @@ func (p *Project) ValidateLayout() error {
 	if err := validateOutputFileName("topdata.wiki.deploy_manifest", filepath.Base(effective.TopData.Wiki.DeployManifest), ".json"); err != nil {
 		failures = append(failures, err)
 	}
+	if err := validateOutputFileName("topdata.wiki.page_index_file", filepath.Base(effective.TopData.Wiki.PageIndexFile), ".json"); err != nil {
+		failures = append(failures, err)
+	}
 	switch effective.TopData.Wiki.Renderer {
 	case "nodebb_tiptap_html":
 	default:
@@ -1218,6 +1240,26 @@ func (p *Project) TopDataWikiStatePath() string {
 	return filepath.Join(p.TopDataWikiRootDir(), filepath.FromSlash(p.EffectiveConfig().TopData.Wiki.StateFile))
 }
 
+func (p *Project) TopDataWikiPageIndexPath() string {
+	return filepath.Join(p.TopDataWikiRootDir(), filepath.FromSlash(p.EffectiveConfig().TopData.Wiki.PageIndexFile))
+}
+
+func (p *Project) TopDataWikiDataPath() string {
+	return filepath.Join(p.TopDataWikiSourceDir(), filepath.FromSlash(p.EffectiveConfig().TopData.Wiki.DataFile))
+}
+
+func (p *Project) TopDataWikiPagePathsPath() string {
+	return filepath.Join(p.TopDataWikiSourceDir(), filepath.FromSlash(p.EffectiveConfig().TopData.Wiki.PagePathsFile))
+}
+
+func (p *Project) TopDataWikiPageTemplatesDir() string {
+	return filepath.Join(p.TopDataWikiSourceDir(), filepath.FromSlash(p.EffectiveConfig().TopData.Wiki.PageTemplatesDir))
+}
+
+func (p *Project) TopDataWikiManualSectionsPath() string {
+	return filepath.Join(p.TopDataWikiSourceDir(), filepath.FromSlash(p.EffectiveConfig().TopData.Wiki.ManualSectionsFile))
+}
+
 func (p *Project) TopDataPackageHAKName() string {
 	return p.EffectiveConfig().TopData.PackageHAK
 }
diff --git a/internal/project/project_test.go b/internal/project/project_test.go
index a1f2810..4e2e7b4 100644
--- a/internal/project/project_test.go
+++ b/internal/project/project_test.go
@@ -432,6 +432,12 @@ topdata:
     output_root: docs
     pages_dir: pages
     state_file: wiki-state.json
+    page_index_file: manifest/page-index.json
+    source: docs-src/wiki
+    data_file: providers/wiki-data.yaml
+    page_paths_file: paths/wiki-paths.yaml
+    page_templates_dir: page-fragments
+    manual_sections_file: sections/defaults.yaml
 autogen:
   cache:
     root: "{paths.cache}/autogen"
@@ -460,6 +466,21 @@ autogen:
 	if got, want := proj.TopDataWikiStatePath(), filepath.Join(root, "cache", "docs", "wiki-state.json"); got != want {
 		t.Fatalf("expected wiki state path %s, got %s", want, got)
 	}
+	if got, want := proj.TopDataWikiPageIndexPath(), filepath.Join(root, "cache", "docs", "manifest", "page-index.json"); got != want {
+		t.Fatalf("expected wiki page-index path %s, got %s", want, got)
+	}
+	if got, want := proj.TopDataWikiDataPath(), filepath.Join(root, "docs-src", "wiki", "providers", "wiki-data.yaml"); got != want {
+		t.Fatalf("expected wiki data path %s, got %s", want, got)
+	}
+	if got, want := proj.TopDataWikiPagePathsPath(), filepath.Join(root, "docs-src", "wiki", "paths", "wiki-paths.yaml"); got != want {
+		t.Fatalf("expected wiki page paths path %s, got %s", want, got)
+	}
+	if got, want := proj.TopDataWikiPageTemplatesDir(), filepath.Join(root, "docs-src", "wiki", "page-fragments"); got != want {
+		t.Fatalf("expected wiki page template path %s, got %s", want, got)
+	}
+	if got, want := proj.TopDataWikiManualSectionsPath(), filepath.Join(root, "docs-src", "wiki", "sections", "defaults.yaml"); got != want {
+		t.Fatalf("expected wiki manual sections path %s, got %s", want, got)
+	}
 	if got, want := proj.AutogenCachePath("manifest.json"), filepath.Join(root, "cache", "autogen", "manifest.json"); got != want {
 		t.Fatalf("expected autogen cache path %s, got %s", want, got)
 	}
@@ -1179,6 +1200,11 @@ func TestValidateLayoutRejectsInvalidTopDataWikiConfig(t *testing.T) {
 					TablesFile:         "../tables.yaml",
 					VisibilityFile:     "../visibility.yaml",
 					TemplatesDir:       ".",
+					DataFile:           "../data.yaml",
+					PagePathsFile:      "../wiki.yaml",
+					PageTemplatesDir:   "../templates/pages",
+					ManualSectionsFile: "../manual/default.yaml",
+					PageIndexFile:      "../page-index.json",
 					ManualSectionsDir:  "../manual",
 					StalePages: TopDataWikiStalePagesConfig{
 						Default:     "delete",
@@ -1202,6 +1228,11 @@ func TestValidateLayoutRejectsInvalidTopDataWikiConfig(t *testing.T) {
 		"topdata.wiki.tables_file",
 		"topdata.wiki.visibility_file",
 		"topdata.wiki.templates_dir",
+		"topdata.wiki.data_file",
+		"topdata.wiki.page_paths_file",
+		"topdata.wiki.page_templates_dir",
+		"topdata.wiki.manual_sections_file",
+		"topdata.wiki.page_index_file",
 		"topdata.wiki.manual_sections_dir",
 		"topdata.wiki.stale_pages.default",
 		"topdata.wiki.stale_pages.live_cleanup",
diff --git a/internal/topdata/native.go b/internal/topdata/native.go
index 054bd75..b1726af 100644
--- a/internal/topdata/native.go
+++ b/internal/topdata/native.go
@@ -210,7 +210,7 @@ func BuildNativeWithOptions(p *project.Project, opts NativeBuildOptions, progres
 	}
 	var prebuiltWiki *wikiResult
 	if opts.BuildWiki {
-		if newestWikiSource, _, err := newestRelevantWikiSource(p.TopDataSourceDir()); err == nil && !newestWikiSource.IsZero() {
+		if newestWikiSource, _, err := newestRelevantWikiSource(p); err == nil && !newestWikiSource.IsZero() {
 			statePath := wikiOutputStatePath(p)
 			outputDir := wikiOutputPagesDir(p)
 			if stateInfo, err := os.Stat(statePath); err == nil && !newestWikiSource.After(stateInfo.ModTime()) {
diff --git a/internal/topdata/wiki_deploy.go b/internal/topdata/wiki_deploy.go
index 57e01fa..23b8762 100644
--- a/internal/topdata/wiki_deploy.go
+++ b/internal/topdata/wiki_deploy.go
@@ -34,6 +34,7 @@ const (
 
 type DeployWikiOptions struct {
 	SourceDir              string
+	PageIndexPath          string
 	Endpoint               string
 	Token                  string
 	Version                string
@@ -119,9 +120,17 @@ func DeployWikiWithOptions(p *project.Project, opts DeployWikiOptions, progress
 	if progress == nil {
 		progress = func(string) {}
 	}
-	if opts.SourceDir == "" {
+	sourceDirWasDefaulted := opts.SourceDir == ""
+	if sourceDirWasDefaulted {
 		opts.SourceDir = wikiOutputPagesDir(p)
 	}
+	if opts.PageIndexPath == "" {
+		if sourceDirWasDefaulted {
+			opts.PageIndexPath = p.TopDataWikiPageIndexPath()
+		} else {
+			opts.PageIndexPath = filepath.Join(filepath.Dir(opts.SourceDir), p.EffectiveConfig().TopData.Wiki.PageIndexFile)
+		}
+	}
 	if _, err := os.Stat(opts.SourceDir); err != nil {
 		return deployResult{}, fmt.Errorf("wiki source directory not found: %w", err)
 	}
@@ -172,7 +181,7 @@ func DeployWikiWithOptions(p *project.Project, opts DeployWikiOptions, progress
 	}
 
 	progress(fmt.Sprintf("Collecting local wiki pages from %s", opts.SourceDir))
-	pages, err := collectLocalPages(opts.SourceDir, namespaces)
+	pages, err := collectLocalPages(opts.SourceDir, opts.PageIndexPath, namespaces)
 	if err != nil {
 		return deployResult{}, err
 	}
@@ -377,12 +386,12 @@ func categoryIDsFromNamespaceEnv(declarations []wikiNamespaceDeclaration) (map[s
 	return categories, nil
 }
 
-func collectLocalPages(sourceDir string, namespaces []string) (map[string]wikiDeployPage, error) {
+func collectLocalPages(sourceDir, pageIndexPath string, namespaces []string) (map[string]wikiDeployPage, error) {
 	namespaceSet := map[string]struct{}{}
 	for _, namespace := range namespaces {
 		namespaceSet[namespace] = struct{}{}
 	}
-	pageIndex, err := loadDeployPageIndex(sourceDir)
+	pageIndex, err := loadDeployPageIndex(sourceDir, pageIndexPath)
 	if err != nil {
 		return nil, err
 	}
@@ -447,8 +456,11 @@ func collectLocalPages(sourceDir string, namespaces []string) (map[string]wikiDe
 	return pages, nil
 }
 
-func loadDeployPageIndex(sourceDir string) (map[string]wikiPageIndexEntry, error) {
-	path := filepath.Join(filepath.Dir(sourceDir), "page-index.json")
+func loadDeployPageIndex(sourceDir, pageIndexPath string) (map[string]wikiPageIndexEntry, error) {
+	path := strings.TrimSpace(pageIndexPath)
+	if path == "" {
+		path = filepath.Join(filepath.Dir(sourceDir), "page-index.json")
+	}
 	raw, err := os.ReadFile(path)
 	if err != nil {
 		if os.IsNotExist(err) {
diff --git a/internal/topdata/wiki_deploy_test.go b/internal/topdata/wiki_deploy_test.go
index 15b784f..ed85b88 100644
--- a/internal/topdata/wiki_deploy_test.go
+++ b/internal/topdata/wiki_deploy_test.go
@@ -305,7 +305,7 @@ func TestCollectLocalPagesReadsGeneratedPageIDFromMarkerWhenPathIsTitleBased(t *
 		t.Fatalf("write source page: %v", err)
 	}
 
-	pages, err := collectLocalPages(sourceDir, []string{"feat"})
+	pages, err := collectLocalPages(sourceDir, "", []string{"feat"})
 	if err != nil {
 		t.Fatalf("collectLocalPages failed: %v", err)
 	}
@@ -349,7 +349,7 @@ func TestCollectLocalPagesReadsCanonicalPublicPathFromPageIndex(t *testing.T) {
 		t.Fatalf("write page index: %v", err)
 	}
 
-	pages, err := collectLocalPages(sourceDir, []string{"spells"})
+	pages, err := collectLocalPages(sourceDir, "", []string{"spells"})
 	if err != nil {
 		t.Fatalf("collectLocalPages failed: %v", err)
 	}
@@ -358,6 +358,44 @@ func TestCollectLocalPagesReadsCanonicalPublicPathFromPageIndex(t *testing.T) {
 	}
 }
 
+func TestCollectLocalPagesUsesConfiguredPageIndexPath(t *testing.T) {
+	root := t.TempDir()
+	sourceDir := filepath.Join(root, "pages")
+	if err := os.MkdirAll(filepath.Join(sourceDir, "spells"), 0755); err != nil {
+		t.Fatalf("create source dir: %v", err)
+	}
+	generated := `<!-- sow-topdata-wiki:page=spells:acid_fog -->
+<!-- sow-topdata-wiki:managed:start hash="sha256:local" -->
+<h1>Acid Fog</h1>
+<!-- sow-topdata-wiki:managed:end -->
+`
+	if err := os.WriteFile(filepath.Join(sourceDir, "spells", "Acid_Fog.html"), []byte(generated), 0644); err != nil {
+		t.Fatalf("write source page: %v", err)
+	}
+	indexPath := filepath.Join(root, "manifest", "pages.json")
+	if err := saveWikiPageIndex(indexPath, wikiPageIndex{
+		Version: wikiGeneratorVersion,
+		Pages: []wikiPageIndexEntry{
+			{
+				PageID:     "spells:acid_fog",
+				Title:      "Acid Fog",
+				PublicPath: "Magic/Acid_Fog",
+				OutputPath: "pages/spells/Acid_Fog.html",
+			},
+		},
+	}); err != nil {
+		t.Fatalf("write page index: %v", err)
+	}
+
+	pages, err := collectLocalPages(sourceDir, indexPath, []string{"spells"})
+	if err != nil {
+		t.Fatalf("collectLocalPages failed: %v", err)
+	}
+	if got := pages["spells:acid_fog"].PublicPath; got != "Magic/Acid_Fog" {
+		t.Fatalf("expected configured page-index public path, got %q", got)
+	}
+}
+
 func TestCollectLocalPagesReadsTitleFromPageIndexForHeadinglessHTML(t *testing.T) {
 	root := t.TempDir()
 	sourceDir := filepath.Join(root, "pages")
@@ -387,7 +425,7 @@ func TestCollectLocalPagesReadsTitleFromPageIndexForHeadinglessHTML(t *testing.T
 		t.Fatalf("write page index: %v", err)
 	}
 
-	pages, err := collectLocalPages(sourceDir, []string{"spells"})
+	pages, err := collectLocalPages(sourceDir, "", []string{"spells"})
 	if err != nil {
 		t.Fatalf("collectLocalPages failed: %v", err)
 	}
diff --git a/internal/topdata/wiki_native.go b/internal/topdata/wiki_native.go
index a00a9dc..5f2ccaa 100644
--- a/internal/topdata/wiki_native.go
+++ b/internal/topdata/wiki_native.go
@@ -131,7 +131,7 @@ func buildWiki(p *project.Project, nativeResult BuildResult, force bool, progres
 	outputDir := wikiOutputPagesDir(p)
 	statePath := wikiOutputStatePath(p)
 
-	digest, err := computeWikiSourceDigest(p.TopDataSourceDir())
+	digest, err := computeWikiSourceDigest(p)
 	if err != nil {
 		return wikiResult{}, err
 	}
@@ -153,7 +153,7 @@ func buildWiki(p *project.Project, nativeResult BuildResult, force bool, progres
 	}
 	manualSections := loadWikiManualSections(p)
 	ctx.manualSections = manualSections
-	ctx.templateDir = filepath.Join(p.TopDataWikiSourceDir(), filepath.FromSlash(p.EffectiveConfig().TopData.Wiki.TemplatesDir), "pages")
+	ctx.templateDir = p.TopDataWikiPageTemplatesDir()
 	ctx.alignmentLinkPattern = p.EffectiveConfig().TopData.Wiki.AlignmentLinks.TargetPattern
 	ctx.wikiTablesPath = filepath.Join(p.TopDataWikiSourceDir(), filepath.FromSlash(p.EffectiveConfig().TopData.Wiki.TablesFile))
 	tableDefinitions, err := loadWikiTableDefinitions(ctx.wikiTablesPath)
@@ -161,7 +161,7 @@ func buildWiki(p *project.Project, nativeResult BuildResult, force bool, progres
 		return wikiResult{}, err
 	}
 	ctx.wikiTableDefinitions = tableDefinitions
-	ctx.wikiDataPath = filepath.Join(p.TopDataWikiSourceDir(), "data.yaml")
+	ctx.wikiDataPath = p.TopDataWikiDataPath()
 	dataProviders, err := loadWikiDataProviders(ctx.wikiDataPath)
 	if err != nil {
 		return wikiResult{}, err
@@ -171,7 +171,7 @@ func buildWiki(p *project.Project, nativeResult BuildResult, force bool, progres
 	if err := ctx.loadWikiVisibility(visibilityPath); err != nil {
 		return wikiResult{}, err
 	}
-	pageSlugOverrides, err := loadWikiPagePathDeclarations(filepath.Join(p.TopDataWikiSourceDir(), "wiki.yaml"))
+	pageSlugOverrides, err := loadWikiPagePathDeclarations(p.TopDataWikiPagePathsPath())
 	if err != nil {
 		return wikiResult{}, err
 	}
@@ -243,7 +243,7 @@ func buildWiki(p *project.Project, nativeResult BuildResult, force bool, progres
 	if err := indexUnregisteredWikiPages(rootDir, outputDir, p.EffectiveConfig().TopData.Wiki.StalePages.Default, ctx, &pageIndex); err != nil {
 		return wikiResult{}, err
 	}
-	if err := saveWikiPageIndex(filepath.Join(rootDir, "page-index.json"), pageIndex); err != nil {
+	if err := saveWikiPageIndex(p.TopDataWikiPageIndexPath(), pageIndex); err != nil {
 		return wikiResult{}, err
 	}
 
@@ -289,8 +289,7 @@ func wikiCachedPagesAreCurrent(outputDir string, state wikiStateDocument) bool {
 
 func loadWikiManualSections(p *project.Project) []wikiManualSection {
 	defaults := defaultWikiManualSections()
-	cfg := p.EffectiveConfig().TopData.Wiki
-	path := filepath.Join(p.TopDataWikiSourceDir(), filepath.FromSlash(cfg.ManualSectionsDir), "default.yaml")
+	path := p.TopDataWikiManualSectionsPath()
 	raw, err := os.ReadFile(path)
 	if err != nil {
 		return defaults
@@ -451,9 +450,11 @@ func saveWikiState(path string, state wikiStateDocument) error {
 	return nil
 }
 
-func computeWikiSourceDigest(sourceDir string) (string, error) {
+func computeWikiSourceDigest(p *project.Project) (string, error) {
 	hasher := sha256.New()
 	_, _ = hasher.Write([]byte(wikiGeneratorVersion))
+	sourceDir := p.TopDataSourceDir()
+	wikiSourceDir := p.TopDataWikiSourceDir()
 	files := []string{}
 	relevantSourceDirs := []string{
 		filepath.Join(sourceDir, "data", "feat"),
@@ -462,7 +463,7 @@ func computeWikiSourceDigest(sourceDir string) (string, error) {
 		filepath.Join(sourceDir, "data", "baseitems"),
 		filepath.Join(sourceDir, "data", "classes"),
 		filepath.Join(sourceDir, "data", "racialtypes"),
-		filepath.Join(sourceDir, "wiki"),
+		wikiSourceDir,
 	}
 	for _, dir := range relevantSourceDirs {
 		_ = filepath.WalkDir(dir, func(path string, d fs.DirEntry, err error) error {
@@ -503,9 +504,10 @@ func computeWikiSourceDigest(sourceDir string) (string, error) {
 	return fmt.Sprintf("%x", hasher.Sum(nil)), nil
 }
 
-func newestRelevantWikiSource(sourceDir string) (time.Time, string, error) {
+func newestRelevantWikiSource(p *project.Project) (time.Time, string, error) {
 	newest := time.Time{}
 	newestPath := ""
+	sourceDir := p.TopDataSourceDir()
 	relevantSourceDirs := []string{
 		filepath.Join(sourceDir, "data", "feat"),
 		filepath.Join(sourceDir, "data", "skills"),
@@ -513,6 +515,7 @@ func newestRelevantWikiSource(sourceDir string) (time.Time, string, error) {
 		filepath.Join(sourceDir, "data", "baseitems"),
 		filepath.Join(sourceDir, "data", "classes"),
 		filepath.Join(sourceDir, "data", "racialtypes"),
+		p.TopDataWikiSourceDir(),
 	}
 	for _, dir := range relevantSourceDirs {
 		err := filepath.WalkDir(dir, func(path string, d fs.DirEntry, err error) error {
diff --git a/internal/topdata/wiki_native_test.go b/internal/topdata/wiki_native_test.go
index 23524a0..9b473cc 100644
--- a/internal/topdata/wiki_native_test.go
+++ b/internal/topdata/wiki_native_test.go
@@ -7,6 +7,8 @@ import (
 	"strings"
 	"testing"
 	"time"
+
+	"gitea.westgate.pw/ShadowsOverWestgate/sow-tools/internal/project"
 )
 
 func TestBuildNativeGeneratesAndSkipsWikiPages(t *testing.T) {
@@ -98,7 +100,7 @@ func TestBuildNativeGeneratesAndSkipsWikiPages(t *testing.T) {
 	if err != nil {
 		t.Fatalf("read state before second build: %v", err)
 	}
-	digestBefore, err := computeWikiSourceDigest(filepath.Join(root, "topdata"))
+	digestBefore, err := computeWikiSourceDigest(proj)
 	if err != nil {
 		t.Fatalf("compute digest before second build: %v", err)
 	}
@@ -1998,13 +2000,20 @@ func TestWikiSourceDigestIncludesTemplates(t *testing.T) {
 	writeFile(t, filepath.Join(root, "data", "skills", "base.json"), `{"rows":[]}`+"\n")
 	templatePath := filepath.Join(root, "wiki", "templates", "pages", "skills.html")
 	writeFile(t, templatePath, `<h1>{{title}}</h1>`+"\n")
+	proj := &project.Project{
+		Root: root,
+		Config: project.Config{
+			Module:  project.ModuleConfig{Name: "Test", ResRef: "test"},
+			TopData: project.TopDataConfig{Source: ".", Wiki: project.TopDataWikiConfig{Source: "wiki"}},
+		},
+	}
 
-	before, err := computeWikiSourceDigest(root)
+	before, err := computeWikiSourceDigest(proj)
 	if err != nil {
 		t.Fatalf("compute initial digest: %v", err)
 	}
 	writeFile(t, templatePath, `<h1>{{title}}</h1><p>Changed</p>`+"\n")
-	after, err := computeWikiSourceDigest(root)
+	after, err := computeWikiSourceDigest(proj)
 	if err != nil {
 		t.Fatalf("compute changed digest: %v", err)
 	}
@@ -2013,6 +2022,80 @@ func TestWikiSourceDigestIncludesTemplates(t *testing.T) {
 	}
 }
 
+func TestBuildWikiHonorsConfiguredWikiPaths(t *testing.T) {
+	root := t.TempDir()
+	mkdirAll(t, filepath.Join(root, "topdata", "data", "skills"))
+	mkdirAll(t, filepath.Join(root, "docs", "wiki", "page-fragments"))
+	mkdirAll(t, filepath.Join(root, "docs", "wiki", "config"))
+	mkdirAll(t, filepath.Join(root, "docs", "wiki", "sections"))
+	writeFile(t, filepath.Join(root, "topdata", "base_dialog.json"), "{}\n")
+	writeFile(t, filepath.Join(root, "topdata", "data", "skills", "base.json"), `{
+  "columns": ["Label", "Name"],
+  "rows": [
+    {
+      "id": 0,
+      "key": "skills:athletics",
+      "Label": "Athletics",
+      "Name": {"tlk": {"key": "skills:athletics.name", "text": "Athletics"}}
+    }
+  ]
+}`+"\n")
+	writeFile(t, filepath.Join(root, "topdata", "data", "skills", "lock.json"), `{"skills:athletics":0}`+"\n")
+	writeFile(t, filepath.Join(root, "docs", "wiki", "page-fragments", "skills.html"), `<h1>{{title}}</h1>`+"\n")
+	writeFile(t, filepath.Join(root, "docs", "wiki", "config", "providers.yaml"), "providers: {}\n")
+	writeFile(t, filepath.Join(root, "docs", "wiki", "config", "paths.yaml"), "page_paths: {}\n")
+	writeFile(t, filepath.Join(root, "docs", "wiki", "config", "tables.yaml"), "tables: {}\n")
+	writeFile(t, filepath.Join(root, "docs", "wiki", "config", "visibility.yaml"), "datasets: {}\n")
+	writeFile(t, filepath.Join(root, "docs", "wiki", "sections", "defaults.yaml"), `
+manual_sections:
+  - id: user_top
+    heading: Custom Top
+`)
+
+	statusPages := false
+	proj := &project.Project{
+		Root: root,
+		Config: project.Config{
+			Module: project.ModuleConfig{Name: "Test", ResRef: "test"},
+			Paths:  project.PathConfig{Build: "build", Cache: ".cache"},
+			TopData: project.TopDataConfig{
+				Source: "topdata",
+				Build:  ".cache",
+				Wiki: project.TopDataWikiConfig{
+					Source:             "docs/wiki",
+					DataFile:           "config/providers.yaml",
+					PagePathsFile:      "config/paths.yaml",
+					TablesFile:         "config/tables.yaml",
+					VisibilityFile:     "config/visibility.yaml",
+					PageTemplatesDir:   "page-fragments",
+					ManualSectionsFile: "sections/defaults.yaml",
+					PageIndexFile:      "manifest/pages.json",
+					StatusPages:        &statusPages,
+				},
+			},
+		},
+	}
+
+	result, err := buildWiki(proj, BuildResult{}, true, nil)
+	if err != nil {
+		t.Fatalf("build wiki with configured paths: %v", err)
+	}
+	if result.PageCount != 1 {
+		t.Fatalf("expected generated skill page, got %d", result.PageCount)
+	}
+	pagePath := filepath.Join(root, ".cache", "wiki", "pages", "skills", "Athletics.html")
+	pageRaw, err := os.ReadFile(pagePath)
+	if err != nil {
+		t.Fatalf("read configured-path wiki page: %v", err)
+	}
+	if !strings.Contains(string(pageRaw), "Custom Top") {
+		t.Fatalf("expected configured manual section file to be used, got:\n%s", pageRaw)
+	}
+	if _, err := os.Stat(filepath.Join(root, ".cache", "wiki", "manifest", "pages.json")); err != nil {
+		t.Fatalf("expected configured page-index file: %v", err)
+	}
+}
+
 func TestWikiPageIDForKeyNormalizesSlashSeparatorsOnly(t *testing.T) {
 	got := wikiPageIDForKey("feat:special/attacks_bull_rush")
 	if want := "feat:special_attacks_bull_rush"; got != want {